This issue happened when the cloned site was SSL enabled.
You could see after the -ssl=on, we clone the site will affect the original records.
root@carger:~# webinoly -version
Webinoly version: 1.13.1
Current stack version: 1.5
root@carger:~# site dev.carger.tips -info
Type: WordPress
Status: Enabled
SSL: false
Access Logs: false
Force Redirect: off
Size: 198M
Cache: false
Multisite: false
WP Auth: true
Debug: true
Database: localhost
DB Name: dev_carger_tips
DB User: dev_carger_tips
DB Prefix: wp_
root@carger:~# wp db query "select * from dev_carger_tips.wp_options where option_name in ('siteurl', 'home')" --allow-root --path=/var/www/dev.carger.tips/htdocs/
+-----------+-------------+------------------------+----------+
| option_id | option_name | option_value | autoload |
+-----------+-------------+------------------------+----------+
| 2 | home | http://dev.carger.tips | yes |
| 1 | siteurl | http://dev.carger.tips | yes |
+-----------+-------------+------------------------+----------+
root@carger:~# site staging.carger.tips -clone-from=dev.carger.tips
Site staging.carger.tips is now a successfull clone of dev.carger.tips
root@carger:~# wp db query "select * from dev_carger_tips.wp_options where option_name in ('siteurl', 'home')" --allow-root --path=/var/www/dev.carger.tips/htdocs/
+-----------+-------------+------------------------+----------+
| option_id | option_name | option_value | autoload |
+-----------+-------------+------------------------+----------+
| 2 | home | http://dev.carger.tips | yes |
| 1 | siteurl | http://dev.carger.tips | yes |
+-----------+-------------+------------------------+----------+
root@carger:~# echo "If the SSL is not enabled in the cloned site, it would be ok"
If the SSL is not enabled in the cloned site, it would be ok
root@carger:~# site staging.carger.tips -delete
Delete Database [Y/n]?
Database of your site staging.carger.tips has been successfully deleted!
Site staging.carger.tips has been successfully deleted!
root@carger:~# wp db query "select * from dev_carger_tips.wp_options where option_name in ('siteurl', 'home')" --allow-root --path=/var/www/dev.carger.tips/htdocs/
+-----------+-------------+------------------------+----------+
| option_id | option_name | option_value | autoload |
+-----------+-------------+------------------------+----------+
| 2 | home | http://dev.carger.tips | yes |
| 1 | siteurl | http://dev.carger.tips | yes |
+-----------+-------------+------------------------+----------+
root@carger:~# site dev.carger.tips -ssl=on
*************************************************************************************************
** Please, be careful with the number of intents or certificates you try to get. **
** Let’s Encrypt provides rate limits to ensure fair usage by as many people as possible. **
** **
** If you are getting errors or having issues when trying to get a new certificate **
** read about the Let's Encrypt rate limit - https://letsencrypt.org/docs/rate-limits/ **
*************************************************************************************************
Please, be sure that the dev.carger.tips subdomain is currently pointing (DNS) to this server.
Certificate for dev.carger.tips already exist and found, wait while we configure your server to use it!
SSL have been successfully enabled for your site dev.carger.tips
root@carger:~# wp db query "select * from dev_carger_tips.wp_options where option_name in ('siteurl', 'home')" --allow-root --path=/var/www/dev.carger.tips/htdocs/
+-----------+-------------+-------------------------+----------+
| option_id | option_name | option_value | autoload |
+-----------+-------------+-------------------------+----------+
| 2 | home | https://dev.carger.tips | yes |
| 1 | siteurl | https://dev.carger.tips | yes |
+-----------+-------------+-------------------------+----------+
root@carger:~# site staging.carger.tips -clone-from=dev.carger.tips
Site staging.carger.tips is now a successfull clone of dev.carger.tips
root@carger:~# wp db query "select * from dev_carger_tips.wp_options where option_name in ('siteurl', 'home')" --allow-root --path=/var/www/dev.carger.tips/htdocs/
+-----------+-------------+----------------------------+----------+
| option_id | option_name | option_value | autoload |
+-----------+-------------+----------------------------+----------+
| 2 | home | http://staging.carger.tips | yes |
| 1 | siteurl | http://staging.carger.tips | yes |
+-----------+-------------+----------------------------+----------+